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| am.tran | AM transformation for LPE |
| am.tran.half | AM transformation for LPE |
| base.ASE.Olig | Baseline ASE estimation for oligonucleotide arrays |
| base.error.Olig | Baseline error estimation for oligonucleotide arrays |
| base.error.Olig.quanOnly | Baseline error estimation for oligonucleotide arrays |
| base.PSE.Olig | Baseline PSE estimation for oligonucleotide arrays |
| boot.base.ASE.Olig | Baseline error bootstrap estimation for oligonucleotide arrays |
| boot.base.error.Olig | Baseline error bootstrap estimation for oligonucleotide arrays |
| boot.base.PSE.Olig | Baseline error bootstrap estimation for oligonucleotide arrays |
| fixbound.predict.smooth.spline | Prediction using smoothing spine |
| hem | Heterogeneous Error Model for Identification of Differential Expressed Genes Under Multiple Conditions |
| hem.eb.prior | Empirical Bayes (EB) Prior Specification |
| hem.fdr | FDR Evaluation |
| hem.null.no | Generation of null data |
| hem.null.one | Generation of null data |
| hem.null.two | Generation of null data |
| hem.preproc | Preprocessing |
| mubcp | Gene expression data for mouse B cell development |
| nonpar.error.Olig | Baseline error nonparametric estimation for oligonucleotide arrays |
| nonpar.no.error.Olig | Baseline error nonparametric estimation for oligonucleotide arrays |
| nonpar.rep.error.Olig | Baseline error nonparametric estimation for oligonucleotide arrays |
| par.error.Olig | Baseline error parametric estimation for oligonucleotide arrays |
| par.no.error.Olig | Baseline error parametric estimation for oligonucleotide arrays |
| par.rep.error.Olig | Baseline error parametric estimation for oligonucleotide arrays |
| pbrain | Gene expression data for primate brains |
| permut | Permutation |
| quant.norm | Quantile normalization |
| quant.normal | Normalization |
| quant.normal2 | Normalization |
| quant.normalize | Quantile normalization |
| remove.sig.genes | Remove significant genes |