CRImage a package to classify cells and calculate tumour cellularity


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Documentation for package ‘CRImage’ version 1.2.0

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CRImage-package CRImage is a package to analyze images and classify cells.
calculateCellularity Calculation of tumour cellularity
calculateThreshold Thresholding
classificationAperio Classification of ScanScopeTX Slides.
classifyCells A function to classify cells
createClassifier Construction of a classifier
createTrainingSet Construction of a training set
CRImage CRImage is a package to analyze images and classify cells.
determineCellularity Determination of cellularity
findSlices calculates the coordinates of the subimages
kernelSmoother A kernel smoother to classify images
localThreshold Internal function to do local thresholding.
numberOfNeighbors Internal function to calculate the number of neighbors of a cell.
paintCells Coloring of classified cells
parseFinalScan Internal function to parse CWS index files.
processAperio Cellularity Calculation of Aperio TX Scanner
segmentCytoplasma Internal function to segment cell cytoplasma
segmentImage Segmentation of an image