CRImage-package | CRImage is a package to analyze images and classify cells. |
calculateCellularity | Calculation of tumour cellularity |
calculateThreshold | Thresholding |
classificationAperio | Classification of ScanScopeTX Slides. |
classifyCells | A function to classify cells |
createClassifier | Construction of a classifier |
createTrainingSet | Construction of a training set |
CRImage | CRImage is a package to analyze images and classify cells. |
determineCellularity | Determination of cellularity |
findSlices | calculates the coordinates of the subimages |
kernelSmoother | A kernel smoother to classify images |
localThreshold | Internal function to do local thresholding. |
numberOfNeighbors | Internal function to calculate the number of neighbors of a cell. |
paintCells | Coloring of classified cells |
parseFinalScan | Internal function to parse CWS index files. |
processAperio | Cellularity Calculation of Aperio TX Scanner |
segmentCytoplasma | Internal function to segment cell cytoplasma |
segmentImage | Segmentation of an image |