An R package for analysis of case-control studies in genetic epidemiology

Documentation for package ‘CGEN’ version 1.4.0

CGEN	An R package for analysis of case-control studies in genetic epidemiology
chromosome.plot	Chromosome plot
getMatchedSets	Case-Control and Nearest-Neighbor Matching
getSummary	Compute summary information
getWaldTest	Compute a Wald test
locusMap.list	List to describe the locus map data
LocusMapData	Locus map data
pheno.list	List to describe the covariate and outcome data
printEffects	Print an effects table
QQ.plot	QQ plot
recode.geno	Recode a vector of genotypes
sas.list	List for SAS data sets
snp.effects	Joint and Stratified Effects
snp.list	List to describe the genotype data
snp.logistic	Logistic regression analysis for a single SNP
snp.matched	Robust G-G and G-E Interaction with Finely-Matched Case-Control Data.
snp.scan.logistic	Logistic regression analysis for an array of SNPs
SNPdata	Sample genotype data
Xdata	Sample covariate and outcome data