Encapsulates X!Tandem in R.


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Documentation for package ‘rTANDEM’ version 1.2.1

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rTANDEM-package An R encapsulation of X!TANDEM ('Jackhammer' release, 2013.06.15)
GetDegeneracy Extract information from rTANDEM result object
GetParamFromXML Convert X!Tandem xml files to R objects and vice versa
GetPeptides Extract information from rTANDEM result object
GetProteins Extract information from rTANDEM result object
GetResultsFromXML Convert X!Tandem xml files to R objects and vice versa
GetTaxoFromXML Convert X!Tandem xml files to R objects and vice versa
rTANDEM Calls X!TANDEM ('Jackhammer' release, 2013.06.15) from R objects or xml files
rtandem Calls X!TANDEM ('Jackhammer' release, 2013.06.15) from R objects or xml files
rTParam rTANDEM S3 and S4 classes
rTResult rTANDEM S3 and S4 classes
rTResult-class Class '"rTResult"'
rTTaxo rTANDEM S3 and S4 classes
setParamValue rTANDEM S3 and S4 classes
tandem Calls X!TANDEM ('Jackhammer' release, 2013.06.15) from R objects or xml files
WriteParamToXML Convert X!Tandem xml files to R objects and vice versa
WriteTaxoToXML Convert X!Tandem xml files to R objects and vice versa