Meta-analysis of RNA-Seq count data in multiple studies


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Documentation for package ‘metaSeq’ version 1.2.2

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metaSeq-package Meta-analysis of RNA-Seq count data in multiple studies
BreastCancer Multiple RNA-Seq count data designed as Breast Cancer cell lines vs Normal cells
Fisher.test Fisher's combined probability method
meta.oneside.noiseq One-sided NOISeq for meta-analysis
meta.readData readData function for meta-analysis
metaSeq Meta-analysis of RNA-Seq count data in multiple studies
other.oneside.pvalues Optional function for non-NOISeq method
pvals P-values or probability calculated by DESeq, edgeR, baySeq, NOISeq, and DEGseq against StudyA
Result.Meta Result of meta.oneside.noiseq against Brast Cancer data
Stouffer.test Stouffer's weighted Z-score method (Inverse normal method)
StudyA Count data of SRP008746