procona-package | Peptide co-expression network construction. |
adj | Accessors for the proconaNet S4 class |
adj-method | Accessors for the proconaNet S4 class |
adj<- | Accessors for the proconaNet S4 class |
adj<--method | Accessors for the proconaNet S4 class |
bootstrapProconaNetwork | bootstrapProconaNetwork |
buildProconaNetwork | buildProconaNetwork |
c2i | c2i |
colorOrder | Accessors for the proconaNet S4 class |
colorOrder-method | Accessors for the proconaNet S4 class |
colorOrder<- | Accessors for the proconaNet S4 class |
colorOrder<--method | Accessors for the proconaNet S4 class |
compareNetworksWithFishersExactTest | compareNetworksWithFishersExactTest |
compareNetworksWithFishersExactTest-method | compareNetworksWithFishersExactTest |
compareNetworksWithFishersExactTestProcona | compareNetworksWithFishersExactTestProcona |
compareNetworksWithFishersExactTestProcona-method | compareNetworksWithFishersExactTestProcona |
corBootstrap | corBootstrap |
correlationWithPhenotypesHeatMap | correlationWithPhenotypesHeatMap |
correlationWithPhenotypesHeatMap-method | correlationWithPhenotypesHeatMap |
dynamicColors | Accessors for the proconaNet S4 class |
dynamicColors-method | Accessors for the proconaNet S4 class |
dynamicColors<- | Accessors for the proconaNet S4 class |
dynamicColors<--method | Accessors for the proconaNet S4 class |
getFisherMatrix | getFisherMatrix |
getFisherMatrix-method | getFisherMatrix |
getPeptideNAs | getPeptideNAs |
goStatTest | goStatTest |
goStatTest-method | goStatTest |
hclust-class | Class '"hclust"' |
i2c | i2c |
i2col | i2col |
masstagdb | A simulated mass tag data base |
mergedColors | Accessors for the proconaNet S4 class |
mergedColors-method | Accessors for the proconaNet S4 class |
mergedColors<- | Accessors for the proconaNet S4 class |
mergedColors<--method | Accessors for the proconaNet S4 class |
mergedMEs | Accessors for the proconaNet S4 class |
mergedMEs-method | Accessors for the proconaNet S4 class |
mergedMEs<- | Accessors for the proconaNet S4 class |
mergedMEs<--method | Accessors for the proconaNet S4 class |
MEs | Accessors for the proconaNet S4 class |
MEs-method | Accessors for the proconaNet S4 class |
MEs<- | Accessors for the proconaNet S4 class |
MEs<--method | Accessors for the proconaNet S4 class |
MMvsPS | Module members vs Peptide Significance |
MMvsPS-method | Module members vs Peptide Significance |
MMvsPSallModules | MMvsPSallModules |
MMvsPSallModules-method | MMvsPSallModules |
moduleMemberCorrelations | moduleMemberCorrelations |
moduleMemberCorrelations-method | moduleMemberCorrelations |
modulePhenotypeCorrelations | modulePhenotypeCorrelations |
modulePhenotypeCorrelations-method | modulePhenotypeCorrelations |
net1 | A simulated mass tag data base |
net2 | A simulated mass tag data base |
networkName | Accessors for the proconaNet S4 class |
networkName-method | Accessors for the proconaNet S4 class |
networkName<- | Accessors for the proconaNet S4 class |
networkName<--method | Accessors for the proconaNet S4 class |
networkPower | Accessors for the proconaNet S4 class |
networkPower-method | Accessors for the proconaNet S4 class |
networkPower<- | Accessors for the proconaNet S4 class |
networkPower<--method | Accessors for the proconaNet S4 class |
networkType | Accessors for the proconaNet S4 class |
networkType-method | Accessors for the proconaNet S4 class |
networkType<- | Accessors for the proconaNet S4 class |
networkType<--method | Accessors for the proconaNet S4 class |
orderMatrixIndex | orderMatrixIndex |
pepnet | Accessors for the proconaNet S4 class |
pepnet-class | Accessors for the proconaNet S4 class |
peptideConnectivityTest | peptideConnectivityTest |
peptideConnectivityTest-method | peptideConnectivityTest |
peptideCorrelationTest | peptideCorrelationTest |
peptideCorrelationTest-method | peptideCorrelationTest |
peptideData | A simulated mass tag data base |
peptides | Accessors for the proconaNet S4 class |
peptides-method | Accessors for the proconaNet S4 class |
peptides<- | Accessors for the proconaNet S4 class |
peptides<--method | Accessors for the proconaNet S4 class |
pepTree | Accessors for the proconaNet S4 class |
pepTree-method | Accessors for the proconaNet S4 class |
pepTree<- | Accessors for the proconaNet S4 class |
pepTree<--method | Accessors for the proconaNet S4 class |
permtest | Accessors for the proconaNet S4 class |
permtest-method | Accessors for the proconaNet S4 class |
permtest<- | Accessors for the proconaNet S4 class |
permtest<--method | Accessors for the proconaNet S4 class |
phenotypes | A simulated mass tag data base |
plotNet | plotNet |
power | Accessors for the proconaNet S4 class |
power-method | Accessors for the proconaNet S4 class |
power<- | Accessors for the proconaNet S4 class |
power<--method | Accessors for the proconaNet S4 class |
ppiPermTest | ppiPermTest |
ppiPermTest-method | ppiPermTest |
print-method | proconaNet S4 class |
printNet | printNet |
proconaNet | proconaNet S4 class |
proconaNet-class | proconaNet S4 class |
proconaVersion | Accessors for the proconaNet S4 class |
proconaVersion-method | Accessors for the proconaNet S4 class |
proconaVersion<- | Accessors for the proconaNet S4 class |
proconaVersion<--method | Accessors for the proconaNet S4 class |
proconaVersionFun | Procona Software Version |
runningStats | runningStats |
samples | Accessors for the proconaNet S4 class |
samples,proconaNet-methods | Accessors for the proconaNet S4 class |
samples-method | Accessors for the proconaNet S4 class |
samples<- | Accessors for the proconaNet S4 class |
samples<-,proconaNet-methods | Accessors for the proconaNet S4 class |
samples<--method | Accessors for the proconaNet S4 class |
show-method | proconaNet S4 class |
subsetModCors | subsetModCors |
subsetPeptideData | subsetPeptideData |
TOM | Accessors for the proconaNet S4 class |
TOM-method | Accessors for the proconaNet S4 class |
TOM<- | Accessors for the proconaNet S4 class |
TOM<--method | Accessors for the proconaNet S4 class |
toPermTest | toPermTest |
toPermTest-method | toPermTest |
universe | A simulated mass tag data base |
utri | utri |