Genominator-package | Data backend for Genomic data |
$-method | Class "ExpData" |
addPrimingWeights | Adding priming weights to an AlignedRead object. |
aggregateExpData | Collapse data into unique entries |
applyMapped | Apply a function over mapped data. |
chr1_yeast | Example datasets from Genominator |
collapseExpData | Combine multiple data sets |
computeCoverage | Compute effort-coverage values |
computePrimingWeights | Compute weights to correct for random hexamer priming. |
ExpData | Class "ExpData" |
ExpData-class | Class "ExpData" |
Genominator | Data backend for Genomic data |
getColnames | Class "ExpData" |
getDBConnection | Class "ExpData" |
getDBFilename | Class "ExpData" |
getIndexColumns | Class "ExpData" |
getMode | Class "ExpData" |
getRegion | Select a region from an ExpData object. |
getSchema | Class "ExpData" |
getTablename | Class "ExpData" |
head-method | Class "ExpData" |
importFromAlignedReads | Import aligned reads to database |
importToExpData | Import data to database |
initialize-method | Class "ExpData" |
joinExpData | Merge ExpData objects |
listTables | Class "ExpData" |
makeGeneRepresentation | Compute a gene representation from annotation. |
mergeWithAnnotation | Combine data with annotation |
plot.genominator.coverage | Create coverage plot |
plot.genominator.goodness.of.fit | Create goodness-of-fit quantile-quantile plot |
regionGoodnessOfFit | Calculate goodness-of-fit statistics |
regionGoodnessOfFit-method | Calculate goodness-of-fit statistics |
regionGoodnessOfFit-methods | Calculate goodness-of-fit statistics |
show-method | Class "ExpData" |
splitByAnnotation | Split data into a list by annotation element. |
summarizeByAnnotation | Summarize data based on genome annotation. |
summarizeExpData | Summarize a data column |
validAnnotation | Check for validity of a annotation object. |
yeastAnno | Example datasets from Genominator |
yeastAnno.sources | Example datasets from Genominator |
[-method | Class "ExpData" |