BiGGR-package | Creates an interface to the BiGG database, provides a framework for simulation and produces flux graphs |
BiGGR | Creates an interface to the BiGG database, provides a framework for simulation and produces flux graphs |
buildSBMLFromBiGG | Build an SBML model from a given reactions file obtained from the BiGG database |
buildSBMLFromGenes | Build an SBML model for specific genes in a given database |
buildSBMLFromPathways | Build an SBML model for specific pathway(s) in a given database |
buildSBMLFromReactionIDs | Build an SBML model for specific reactions in a given database |
createLIMFromBiGG | Create a LIM model object from a BiGG database file |
createLIMFromSBML | Create a LIM model object from an SBML file |
E.coli_iAF1260 | Ecoli dataset with ORFs and thermodynamic information |
E.coli_iJR904 | Ecoli genome-scale model |
E.coli_textbook | Ecoli dataset from the BiGG database |
extractGeneAssociations | Extract informations on genes from a given database |
extractPathways | Extract all pathways from given database |
getPathwaysForSBML | Extract all pathways from a database that are relevant for a given SBML model |
getRates | Get Optimized Rates |
Glycolysis | Metabolic reconstruction of Glycolysis pathway |
H.pylori_ilT341 | H.pylori in silico genome-scale characterization of single and double deletion mutants |
H.sapiens_Recon_1 | Reconstruction of human metabolism from the BiGG database |
M.barkeri_iAF692 | Metabolic reconstruction of M.barkeri from the BiGG database |
M.tuberculosis_iNJ661 | Metabolic reconstruction of M.tuberculosis from the BiGG database |
P.putida_iJN746 | Metabolic reconstruction of P.putida from the BiGG database |
Recon2 | Human metabolic reconstruction Recon2 |
S.aureus_iSB619 | Metabolic reconstruction of S.aureus from the BiGG database |
S.cerevisiae_iND750 | Metabolic reconstruction of S.cerevisiae from the BiGG database |
sbml2hyperdraw | Returns a graph representation of an SBML model |