XhybExamples-class        package:XhybCasneuf        R Documentation

_C_l_a_s_s "_X_h_y_b_E_x_a_m_p_l_e_s"

_D_e_s_c_r_i_p_t_i_o_n:

     Class containing information of cross-hybridisation examples

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("XhybExamples",
     ...)'.

_S_l_o_t_s:

     '_X': Object of class '"character"'  contains the ID of probe set X

     '_Y': Object of class '"character"'  contains the ID of probe set Y

     '_I_V_X': Object of class '"numeric"'  contains the expression
          intensities of X in the Tissue dataset 

     '_I_V_Y': Object of class '"numeric"'  contains the expression
          intensities of Y in the Tissue dataset  

     '_I_V_X_i': Object of class '"matrix"'  contains the expression
          intensities of X's reporters in the Tissue dataset 

     '_a_i': Object of class '"numeric"'  contains the alignment scores
          of X's reporters to Y's transcript sequence

_M_e_t_h_o_d_s:

     _p_l_o_t_E_x_a_m_p_l_e 'signature(ex = "XhybExamples")': ... 

_A_u_t_h_o_r(_s):

     Tineke Casneuf tine@ebi.ac.uk

_R_e_f_e_r_e_n_c_e_s:

     Casneuf, Van de Peer and Huber (submitted);  AtgenExpress data
     used: Schmid, M., Davison, T. S., Henz, S. R., Pape, U. J., Demar,
     M., Vingron, M. Schoelkopf, B. Weigel, D., and Lohmann, J. (2005)
     A gene expression map of Arabidopsis development. Nature Genetics,
     37, 501-506.

_E_x_a_m_p_l_e_s:

     data(ex1)
     data(ex2)
     data(ex3)
     plotExample(ex1)
     plotExample(ex2)
     plotExample(ex3)

