neveCGHmatch            package:Neve2006            R Documentation

_N_e_v_e _C_a_n_c_e_r _C_e_l_l _2_0_0_6 _e_x_p_r_e_s_s_i_o_n _p_l_u_s _C_G_H _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     ExpressionSet and cghSet

_U_s_a_g_e:

     data(neveCGHmatch)
     data(neveRMAmatch)
     data(neveCels)

_F_o_r_m_a_t:

     a cghSet for neveCGHmatch and an ExpressionSet for neveRMAmatch. 
     There are only 50 samples because only 50 could be aligned on the
     given sample name tokens in the caArrayDB data as of June 9 2007.
     Those sample name tokens are very mangled in the CEL files.

     the neveCels data are an AffyBatch with original sample names.

_S_o_u_r_c_e:

     links are provided in the pdf of the Cancer Cell paper; see the
     PMID of 'experimentData(neveCGHmatch)'

_R_e_f_e_r_e_n_c_e_s:

     PMID 17157791

_E_x_a_m_p_l_e_s:

     data(neveCGHmatch)
     neveCGHmatch
     logRatios(neveCGHmatch)[1:4,1:4]
     data(neveRMAmatch)
     neveRMAmatch

