plotMA.Rd
MA-plot addaptation to show the shrinking effect.
# S4 method for DEGSet plotMA(object, title = NULL, label_points = NULL, label_column = "symbol", limit = NULL, diff = 5, raw = FALSE, correlation = FALSE, ...)
object | DEGSet class. |
---|---|
title | Optional. Plot title. |
label_points | Optionally label these particular points. |
label_column | Match label_points to this column in the results. |
limit | Absolute maximum to plot on the log2FoldChange. |
diff | Minimum difference between logFoldChange before and after shrinking. |
raw | Whether to plot just the unshrunken log2FC. |
correlation | Whether to plot the correlation of the two logFCs. |
... | Optional parameters to pass. |
MA-plot ggplot.
#>#>#>#>#>#>#>#>#>plotMA(res[["condition_B_vs_A"]])#> Error in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, resolveHJust(x$just, x$hjust), resolveVJust(x$just, x$vjust), x$rot, 0): polygon edge not found