gatingset_to_flowjo {CytoML}R Documentation

Convert a GatingSet to flowJo workspace

Description

It is a R wrapper for the docker app (https://hub.docker.com/r/wjiang2/gs-to-flowjo)

Usage

gatingset_to_flowjo(
  gs,
  outFile,
  showHidden = FALSE,
  docker_img = "wjiang2/gs-to-flowjo",
  ...
)

Arguments

gs

a GatingSet object or a folder contains the GatingSet archive (generated by previous save_gs call)

outFile

the workspace file path to write

docker_img

the docker image that does the actual work

...

other arguments passed to save_gs

Value

nothing

Examples

## Not run: 
library(flowWorkspace)

path <- system.file("extdata",package="flowWorkspaceData")
gs_path <- list.files(path, pattern = "gs_manual",full = TRUE)
gs <- load_gs(gs_path)

#output to flowJo
outFile <- tempfile(fileext = ".wsp")
gatingset_to_flowjo(gs, outFile)

#or directly use the archive as the input (to avoid the extra copying inside of the wrapper)
gatingset_to_flowjo(gs_path, outFile)

## End(Not run)

[Package CytoML version 1.99.12 Index]