adjustmentBaalPlot {BaalChIP}R Documentation

Method adjustmentBaalPlot

Description

Method adjustmentBaalPlot

Produces a density plot of the distribution of allelic ratios (REF/TOTAL) before and after BaalChIP adjustment for RM and RAF biases.

Usage

adjustmentBaalPlot(.Object, col = c("green3", "gray50"))

## S4 method for signature 'BaalChIP'
adjustmentBaalPlot(.Object, col = c("green3", "gray50"))

Arguments

.Object

An object of the BaalChIP class.

col

A character vector indicating the colours for the density plot ( default is c( 'green3','gray50') ).

Value

A plot

Author(s)

Ines de Santiago

See Also

BaalChIP.report, summaryQC

Examples

data('BaalObject')
adjustmentBaalPlot(BaalObject)
adjustmentBaalPlot(BaalObject, col=c('blue','pink'))

[Package BaalChIP version 1.13.0 Index]